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This repository was archived by the owner on Mar 20, 2023. It is now read-only.
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This repository was archived by the owner on Mar 20, 2023. It is now read-only.
Ion related initial values set in the NEURON parser not passed to CoreNEURON #779
Some scripts in NEURON when instantiating the cells might define the initial value of ion variables like:
ko0_k_ion = 3.82 //mM
ki0_k_ion = 140 //mM
These variables (from my understanding) seem that when CoreNEURON gets executed in file mode (using its coredat files) are not passed to CoreNEURON to set them when it registers the ions in
cc: @pramodk@nrnhines This issue is a bit related to the issue we were debugging together in the past with NetPyNE simulations however the issue we were seeing then is fixed from this PR #775
It seems like this issue doesn't influence the spikes of the simulation tested with small circuits of the M1 and S1 NetPyNE models. Still I have created a draft PR to solve this issue here: #780
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iomaganaris commentedon Feb 21, 2022
Edit: These values exist in the
globals.datfile from thecoredatfiles but for some reason are not set properly in CoreNEURONiomaganaris commentedon Feb 22, 2022
It seems like this issue doesn't influence the spikes of the simulation tested with small circuits of the M1 and S1 NetPyNE models. Still I have created a draft PR to solve this issue here: #780