Issues

• common, pair, split, split2: lost or changed data with exit 0, and inputs deleted by -O / -f

  shenwei356/seqkit#620 · Filter by author splaisan opened on Oct 20, 2026

• sliding, merge-slides, mutate, translate, replace: panics, lost windows and wrong output with exit 0

  shenwei356/seqkit#619 · Filter by author splaisan opened on Oct 20, 2026

• faidx, locate, amplicon, fish: wrong output, panics and lost data, often with exit 0

  shenwei356/seqkit#618 · Filter by author splaisan opened on Oct 20, 2026

• sana and scat: crashes, and records lost or doubled with exit 0

  shenwei356/seqkit#617 · Filter by author splaisan opened on Oct 20, 2026

• watch and bam: panics, and asked output that is missing with exit 0

  shenwei356/seqkit#616 · Filter by author splaisan opened on Oct 20, 2026

• shuffle, sample, sample2, split: records lost or changed and user files deleted, with exit 0

  shenwei356/seqkit#615 · Filter by author splaisan opened on Oct 20, 2026

• concat, head-genome, rename, range: descriptions cut or lost, rename -m overwrites, range wraps, concat -F misplaces fill (exit 0)

  shenwei356/seqkit#614 · Filter by author splaisan opened on Oct 20, 2026

• sum: a file that fails is left out of the output, but the exit code is 0

  shenwei356/seqkit#613 · Filter by author splaisan opened on Oct 19, 2026
  1

• convert: no range check between Phred encodings, so a wrong --from writes a broken FASTQ (exit 0)

  shenwei356/seqkit#612 · Filter by author splaisan opened on Oct 19, 2026
  1

• seqkit pre-release binaries v2.15.0

  shenwei356/seqkit#608 · Filter by author shenwei356 opened on Oct 15, 2026

• Trim a multiple sequence alignment based on a BED

  shenwei356/seqkit#477 · Filter by author mbhall88 opened on Jul 5, 2024
  4

• [feature request] seqkit subseq with --circular option?

  shenwei356/seqkit#475 · Filter by author xinehc opened on Jun 28, 2024
  4

• Parallel decompression of FASTQ files generated by seqkit

  enhancement
  shenwei356/seqkit#443 · Filter by author divonlan opened on Mar 9, 2024
  5

• seqkit amplicon only keeps one amplicon

  enhancement
  shenwei356/seqkit#191 · Filter by author mlosilla opened on Feb 22, 2021
  5

• subseq enhancement - fasta ID and comment for bed, gtf and gff

  enhancement
  shenwei356/seqkit#177 · Filter by author thackl opened on Jan 22, 2021
  2