proteomics

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

🧬 gget enables efficient querying of genomic reference databases

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers OmicsHorizon.

A Python API for the RCSB Protein Data Bank (PDB)

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.

modular & open DIA search

A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences

A deep learning toolkit for mass spectrometry

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

DeepLC: Retention time prediction for peptides carrying any modification.

Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

MIPHEI-ViT: Repository to train Image-to-Image H&E to Immunofluorescence models

Infrastructure of AlphaX ecosystem

Deep (Transfer) Learning for Peptide Retention Time Prediction

Fast and flexible semi-supervised learning for peptide detection in Python

National Microbiome Data Collaborative (NMDC) unified data model

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis